../../tmp/servers/virsirnadb/1349558577
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1970 | 1 | caactgagcttgccatact | 19 | |
| D28917.1 | HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g | 2363 | .............t..... | 2381 | 94 |
| AF046866.1 | Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds | 2363 | ....c.............. | 2381 | 94 |
| DQ437509.2 | Hepatitis C virus isolate 452 polyprotein gene, partial cds | 2024 | .............t..... | 2042 | 94 |
| D17763.1 | HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome | 2363 | .............t..... | 2381 | 94 |
| EF424626.1 | Hepatitis C virus subtype 6p isolate QC216, complete genome | 2348 | ..........c..a..... | 2366 | 89 |
| DQ480513.1 | Hepatitis C virus subtype 6a strain 6a35, complete genome | 2319 | .t..gc............. | 2337 | 84 |
| DQ480514.1 | Hepatitis C virus subtype 6a strain 6a63, complete genome | 2319 | .t..gc............. | 2337 | 84 |
| DQ480516.1 | Hepatitis C virus subtype 6a strain 6a61, complete genome | 2319 | .t..gc............. | 2337 | 84 |
| DQ480517.1 | Hepatitis C virus subtype 6a strain 6a73, complete genome | 2319 | .t..gc............. | 2337 | 84 |
| DQ480520.1 | Hepatitis C virus subtype 6a strain 6a67, complete genome | 2319 | .t..gc............. | 2337 | 84 |
| EU246930.1 | Hepatitis C virus strain D9 polyprotein gene, complete cds | 2337 | .c..gc............. | 2355 | 84 |
| EU408326.1 | Hepatitis C virus isolate 537798 polyprotein precursor, gene, complet | 2356 | ..........a..g..t.. | 2374 | 84 |
| EU256074.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V264/2005, complet | 7299 | ___.............___ | 7311 | 68 |
| EU155366.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V294/2002, complet | 2959 | _..t.ct............ | 2976 | 78 |
| EF424629.1 | Hepatitis C virus subtype 6c isolate Th846, complete genome | 2345 | ..........c..a..___ | 2360 | 73 |
| EU246933.1 | Hepatitis C virus strain D33 polyprotein gene, complete cds | 2325 | ....ac..........___ | 2340 | 73 |
| X61596.1 | Hepatitis C virus core, E1, NS1/E2, NS2, NS3, NS4a, NS4b and NS5 gene | 7358 | ___............c.__ | 7371 | 68 |
| EU155316.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V419/2002, complet | 7323 | ___............c.__ | 7336 | 68 |
| EU256003.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V444/2006, complet | 1033 | _____...........c.. | 1020 | 68 |
| D14853.1 | HPCCGS Hepatitis C virus (isolate HC-G9) genomic RNA, complete genome | 7375 | ___............____ | 7386 | 63 |
| AJ132996.1 | Hepatitis C virus, complete genome, isolate HCV-AD78 | 3022 | _______............ | 3033 | 63 |
| AB049087.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT05 | 2986 | _______............ | 2997 | 63 |
| AY051292.1 | Hepatitis C virus (isolate India) polyprotein mRNA, complete cds | 7375 | ___............____ | 7386 | 63 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 3017 | _______............ | 3028 | 63 |
| AY587844.1 | Hepatitis C virus strain N589 polyprotein gene, complete cds | 2965 | _______............ | 2976 | 63 |
| AY651061.1 | Hepatitis C virus isolate Khaja1, complete genome | 7375 | ___............____ | 7386 | 63 |
| AB154183.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 3005 | _______............ | 3016 | 63 |
| EF407423.1 | Hepatitis C virus isolate 8028 polyprotein gene, complete cds | 7321 | ___............____ | 7332 | 63 |
| EF407455.1 | Hepatitis C virus isolate 7065 polyprotein gene, complete cds | 7335 | ___............____ | 7346 | 63 |
| EF407461.1 | Hepatitis C virus isolate 5004 polyprotein gene, complete cds | 2997 | _______............ | 3008 | 63 |
| EF407470.1 | Hepatitis C virus isolate 4064 polyprotein gene, complete cds | 2969 | _______............ | 2980 | 63 |
| EF407480.1 | Hepatitis C virus isolate 3043 polyprotein gene, complete cds | 2964 | _______............ | 2975 | 63 |
| EU155379.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V29/2003, complete | 7271 | ___............____ | 7282 | 63 |
| EU362897.1 | Hepatitis C virus isolate 7065_FU24 polyprotein (pol) gene, complete | 7334 | ___............____ | 7345 | 63 |
| EU155213.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V101/2004, complet | 7304 | ___............____ | 7315 | 63 |
| EU155227.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V157/2003, complet | 2965 | _______............ | 2976 | 63 |
| EU482831.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V25/2003, complete | 7281 | ___............____ | 7292 | 63 |
| EU482857.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V263/2005, complet | 7292 | ___............____ | 7303 | 63 |
| EU482881.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V383/2003, complet | 2974 | _______............ | 2985 | 63 |
| EU155250.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V358/2006, complet | 7300 | ___............____ | 7311 | 63 |
| EU155268.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V396/2006, complet | 7270 | ___............____ | 7281 | 63 |
| EU155298.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V334/2002, complet | 7305 | ___............____ | 7316 | 63 |
| EU155323.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V429/2002, complet | 7286 | ___............____ | 7297 | 63 |
| EU569723.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V13/2005, complete | 7294 | ___............____ | 7305 | 63 |
| EU255930.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V237/2005, complet | 7301 | ___............____ | 7312 | 63 |
| EU255933.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V112/2003, complet | 7283 | ___............____ | 7294 | 63 |
| EU255940.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V433/2006, complet | 7308 | ___............____ | 7319 | 63 |
| EU255941.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V697/2006, complet | 7307 | ___............____ | 7318 | 63 |
| EU255950.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V241/2005, complet | 7293 | ___............____ | 7304 | 63 |
| EU256064.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V376/2006, complet | 2965 | _______............ | 2976 | 63 |
| EU256068.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V405/2006, complet | 7295 | ___............____ | 7306 | 63 |
| EU256090.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V162/2002, complet | 2965 | _______............ | 2976 | 63 |
| EU256097.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V324/2001, complet | 7301 | ___............____ | 7312 | 63 |
| EU255999.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V116/2002, complet | 7288 | ___............____ | 7299 | 63 |
| EU256004.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V45/2005, complete | 7282 | ___............____ | 7293 | 63 |
| EU256031.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V89/2006, complete | 7299 | ___............____ | 7310 | 63 |
| EU256046.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V392/2006, complet | 7301 | ___............____ | 7312 | 63 |
| EU256069.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V229/2006, complet | 7282 | ___............____ | 7293 | 63 |
| EU255973.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V180/1990, complet | 7296 | ___............____ | 7307 | 63 |
| EU781824.1 | Hepatitis C virus subtype 1a isolate DN14, complete genome | 7321 | ___............____ | 7332 | 63 |
| EU862836.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V244/2003, complet | 7301 | ___............____ | 7312 | 63 |